Gff3Record

Mojo struct 🡭

Gff3Record

@memory_only
struct Gff3Record

Single GFF3 feature (owned). Coordinates 1-based inclusive.

Fields

• Seqid (BString)
• Source (BString)
• Type (BString)
• Start (UInt64)
• End (UInt64)
• Score (Optional[Float64])
• Strand (Optional[Gff3Strand])
• Phase (Optional[UInt8])
• Attributes (Gff3Attributes)

Implemented traits

AnyType, Copyable, ImplicitlyDestructible, Movable, Writable

Methods

seqid

def seqid(ref self) -> String

Args:

• self (Self)

Returns:

String

source

def source(ref self) -> String

Args:

• self (Self)

Returns:

String

feature_type

def feature_type(ref self) -> String

Args:

• self (Self)

Returns:

String

start_position

def start_position(self) -> Position

Args:

• self (Self)

Returns:

Position

end_position

def end_position(self) -> Position

Args:

• self (Self)

Returns:

Position

interval

def interval(self) -> Interval

Args:

• self (Self)

Returns:

Interval

get_attribute

def get_attribute(ref self, key: String) -> Optional[BString]

Args:

• self (Self)
• key (String)

Returns:

Optional

get_all_attributes

def get_all_attributes(ref self, key: String) -> List[BString]

Return all values for key (for multi-value GFF3 attributes like Parent).

Args:

• self (Self)
• key (String)

Returns:

List

write_to

def write_to[w: Writer](ref self, mut writer: w)

Write one tab-delimited GFF3 line.

Parameters:

• w (Writer)

Args:

• self (Self)
• writer (w)