FastqBatch

Mojo struct 🡭

FastqBatch

@memory_only
struct FastqBatch

Implemented traits

AnyType, Copyable, GpuMovableBatch, ImplicitlyDestructible, Movable, Sized, Writable

Methods

__init__

fn __init__(out self, batch_size: Int = 4096, avg_record_size: Int = 150, quality_offset: UInt8 = UInt8(33))

Args:

• batch_size (Int)
• avg_record_size (Int)
• quality_offset (UInt8)
• self (Self)

Returns:

Self

fn __init__(out self, records: List[FastqRecord], avg_record_size: Int = 150, quality_offset: UInt8 = UInt8(33))

Args:

• records (List[FastqRecord])
• avg_record_size (Int)
• quality_offset (UInt8)
• self (Self)

Returns:

Self

Raises:

add

fn add(mut self, record: FastqRecord)

Args:

• self (Self)
• record (FastqRecord)

fn add[origin: MutOrigin](mut self, record: FastqView[origin])

Parameters:

• origin (MutOrigin)

Args:

• self (Self)
• record (FastqView[origin])

to_device

fn to_device(self, ctx: DeviceContext) -> DeviceFastqBatch

Args:

• self (Self)
• ctx (DeviceContext)

Returns:

DeviceFastqBatch

Raises:

stage

fn stage(self, ctx: DeviceContext) -> StagedFastqBatch

Args:

• self (Self)
• ctx (DeviceContext)

Returns:

StagedFastqBatch

Raises:

num_records

fn num_records(self) -> Int

Args:

• self (Self)

Returns:

Int

seq_len

fn seq_len(self) -> Int

Args:

• self (Self)

Returns:

Int

quality_offset

fn quality_offset(self) -> UInt8

Args:

• self (Self)

Returns:

UInt8

__len__

fn __len__(self) -> Int

Args:

• self (Self)

Returns:

Int

__repr__

fn __repr__(self) -> String

Args:

• self (Self)

Returns:

String

get_record

fn get_record(self, index: Int) -> FastqRecord

Args:

• self (Self)
• index (Int)

Returns:

FastqRecord

Raises:

get_ref

fn get_ref(self, index: Int) -> FastqView[origin_of(self)]

Args:

• self (Self)
• index (Int)

Returns:

FastqView[origin_of(self)]

Raises:

to_records

fn to_records(self) -> List[FastqRecord]

Args:

• self (Self)

Returns:

List[FastqRecord]

Raises:

write_to

fn write_to(self, mut w: T)

Args:

• self (Self)
• w (T)

Raises: