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BlazeSeq

FastqBatch

Mojo struct 🡭

FastqBatch

Section titled “FastqBatch”
@memory_only
struct FastqBatch

Implemented traits

Section titled “Implemented traits”

AnyType, Copyable, GpuMovableBatch, ImplicitlyDestructible, Movable, Sized, Writable

Methods

Section titled “Methods”

__init__

Section titled “__init__”
def __init__(out self, batch_size: Int = 4096, avg_record_size: Int = 150, quality_offset: UInt8 = 33)

Args:

  • batch_size (Int)
  • avg_record_size (Int)
  • quality_offset (UInt8)
  • self (Self)

Returns:

Self

def __init__(out self, records: List[FastqRecord], avg_record_size: Int = 150, quality_offset: UInt8 = 33)

Args:

  • records (List)
  • avg_record_size (Int)
  • quality_offset (UInt8)
  • self (Self)

Returns:

Self

Raises:

add

Section titled “add”
def add(mut self, record: FastqRecord)

Args:

  • self (Self)
  • record (FastqRecord)
def add[origin: MutOrigin](mut self, record: FastqView[origin])

Parameters:

  • origin (MutOrigin)

Args:

  • self (Self)
  • record (FastqView)

to_device

Section titled “to_device”
def to_device(self, ctx: DeviceContext) -> DeviceFastqBatch

Args:

  • self (Self)
  • ctx (DeviceContext)

Returns:

DeviceFastqBatch

Raises:

stage

Section titled “stage”
def stage(self, ctx: DeviceContext) -> StagedFastqBatch

Args:

  • self (Self)
  • ctx (DeviceContext)

Returns:

StagedFastqBatch

Raises:

num_records

Section titled “num_records”
def num_records(self) -> Int

Args:

  • self (Self)

Returns:

Int

seq_len

Section titled “seq_len”
def seq_len(self) -> Int

Args:

  • self (Self)

Returns:

Int

quality_offset

Section titled “quality_offset”
def quality_offset(self) -> UInt8

Args:

  • self (Self)

Returns:

UInt8

__len__

Section titled “__len__”
def __len__(self) -> Int

Args:

  • self (Self)

Returns:

Int

__repr__

Section titled “__repr__”
def __repr__(self) -> String

Args:

  • self (Self)

Returns:

String

get_record

Section titled “get_record”
def get_record(self, index: Int) -> FastqRecord

Args:

  • self (Self)
  • index (Int)

Returns:

FastqRecord

Raises:

get_ref

Section titled “get_ref”
def get_ref(self, index: Int) -> FastqView[origin_of(self)]

Args:

  • self (Self)
  • index (Int)

Returns:

FastqView

Raises:

to_records

Section titled “to_records”
def to_records(self) -> List[FastqRecord]

Args:

  • self (Self)

Returns:

List

Raises:

write_to

Section titled “write_to”
def write_to(self, mut w: T)

Args:

  • self (Self)
  • w (T)

Raises: