ParserConfig

Mojo struct 🡭

ParserConfig

@memory_only
struct ParserConfig

Configuration struct for FASTQ parser options.

Centralizes buffer capacity, growth policy, validation flags, and quality schema settings. Pass as a comptime parameter to FastqParser, e.g. FastqParser[FileReader, ParserConfig(check_ascii=False)].

Attributes: buffer_capacity: Size in bytes of the internal read buffer. Larger values can improve throughput for large files but use more memory. buffer_max_capacity: Maximum buffer size when growth is enabled. buffer_growth_enabled: If True, buffer grows when a line exceeds buffer_capacity, up to buffer_max_capacity. Disable for fixed memory. check_ascii: If True, validate that all record bytes are ASCII. check_quality: If True, validate quality bytes against the quality schema. quality_schema: Optional schema name; used when not passed to __init__. One of: “generic”, “sanger”, “solexa”, “illumina_1.3”, “illumina_1.5”, “illumina_1.8”.

Fields

• buffer_capacity (Int)
• buffer_max_capacity (Int)
• buffer_growth_enabled (Bool)
• check_ascii (Bool)
• check_quality (Bool)
• quality_schema (Optional[String])

Implemented traits

AnyType, Copyable, ImplicitlyDestructible, Movable

Methods

__init__

def __init__(out self, buffer_capacity: Int = 262144, buffer_max_capacity: Int = 1073741824, buffer_growth_enabled: Bool = False, check_ascii: Bool = False, check_quality: Bool = False, quality_schema: Optional[String] = None)

Args:

• buffer_capacity (Int)
• buffer_max_capacity (Int)
• buffer_growth_enabled (Bool)
• check_ascii (Bool)
• check_quality (Bool)
• quality_schema (Optional)
• self (Self)

Returns:

Self